Sven Rahmann : rechercher sur Z-Library

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1

Peak Detection Method Evaluation for Ion Mobility Spectrometry by Using Machine Learning Approaches

Hauschild, Anne-Christin, Kopczynski, Dominik, D'Addario, Marianna, Baumbach, Jörg, Rahmann, Sven, Baumbach, Jan

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 424 KB

english, 2013

2

Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3

Martin, Marcel, Maßhöfer, Lars, Temming, Petra, Rahmann, Sven, Metz, Claudia, Bornfeld, Norbert, van de Nes, Johannes, Klein-Hitpass, Ludger, Hinnebusch, Alan G, Horsthemke, Bernhard, Lohmann, Dietmar

Journal:

Nature Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 402 KB

english, 2013

3

Probabilistic Arithmetic Automata and Their Applications

Marschall, Tobias, Herms, Inke, Kaltenbach, Hans-Michael, Rahmann, Sven

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 405 KB

english, 2012

4

On the Distribution of the Number of Missing Words in Random Texts

RAHMANN, SVEN, RIVALS, ERIC

Journal:

Combinatorics Probability & Computing

Année:

2003

Langue:

english

Fichier:

PDF, 168 KB

english, 2003

5

Modeling and simulating networks of interdependent protein interactions

Stöcker, Bianca K., Köster, Johannes, Zamir, Eli, Rahmann, Sven

Journal:

Integrative Biology

Année:

2018

Langue:

english

Fichier:

PDF, 4.73 MB

english, 2018

6

Snakemake—a scalable bioinformatics workflow engine

Köster, Johannes, Rahmann, Sven

Journal:

Année:

2018

Fichier:

PDF, 37 KB

2018

7

An Algorithm to Compute the Character Access Count Distribution for Pattern Matching Algorithms

Marschall, Tobias, Rahmann, Sven

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 521 KB

english, 2011

8

Integer linear programming approaches for non-unique probe selection

Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert

Journal:

Discrete Applied Mathematics

Année:

2007

Langue:

english

Fichier:

PDF, 246 KB

english, 2007

9

Algorithms for subsequence combinatorics

Cees Elzinga, Sven Rahmann, Hui Wang

Journal:

Theoretical Computer Science

Année:

2008

Langue:

english

Fichier:

PDF, 671 KB

english, 2008

10

Combinatorics of periods in strings

Eric Rivals, Sven Rahmann

Journal:

Journal of Combinatorial Theory, Series A

Année:

2003

Langue:

english

Fichier:

PDF, 263 KB

english, 2003

11

Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling

Stefan Wolfsheimer, Inke Herms, Sven Rahmann, Alexander K Hartmann

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 634 KB

english, 2011

12

Structural Identifiability in Low-Rank Matrix Factorization

Epameinondas Fritzilas, Martin Milanič, Sven Rahmann, Yasmin A. Rios-Solis

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 560 KB

english, 2010

13

Differentiation of chronic obstructive pulmonary disease (COPD) including lung cancer from healthy control group by breath analysis using ion mobility spectrometry

Michael Westhoff, Patrick Litterst, Sasidhar Maddula, Bertram Bödeker, Sven Rahmann, Antony N. Davies, Jorg Ingo Baumbach

Journal:

International Journal for Ion Mobility Spectrometry

Année:

2010

Langue:

english

Fichier:

PDF, 786 KB

english, 2010

14

Partitioning biological data with transitivity clustering

Wittkop, Tobias, Emig, Dorothea, Lange, Sita, Rahmann, Sven, Albrecht, Mario, Morris, John H, Böcker, Sebastian, Stoye, Jens, Baumbach, Jan

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 195 KB

english, 2010

15

HMM Logos for visualization of protein families

Benjamin Schuster-Böckler, Jörg Schultz, Sven Rahmann

Journal:

BMC Bioinformatics

Année:

2004

Langue:

english

Fichier:

PDF, 493 KB

english, 2004

16

Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing

Tobias Wittkop, Jan Baumbach, Francisco P Lobo, Sven Rahmann

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2007

17

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

Tobias Müller, Sven Rahmann, Thomas Dandekar, Matthias Wolf

Journal:

BMC Evolutionary Biology

Année:

2004

Langue:

english

Fichier:

PDF, 597 KB

english, 2004

18

High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis

Torben Friedrich, Sven Rahmann, Wilfried Weigel, Wolfgang Rabsch, Angelika Fruth, Eliora Ron, Florian Gunzer, Thomas Dandekar, Jörg Hacker, Tobias Müller, Ulrich Dobrindt

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 2.12 MB

english, 2010

19

CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks

Jan Baumbach, Karina Brinkrolf, Lisa F Czaja, Sven Rahmann, Andreas Tauch

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 2.19 MB

english, 2006

20

CoryneCenter – An online resource for the integrated analysis of corynebacterial genome and transcriptome data

Heiko Neuweger, Jan Baumbach, Stefan Albaum, Thomas Bekel, Michael Dondrup, Andrea T Hüser, Jörn Kalinowski, Sebastian Oehm, Alfred Pühler, Sven Rahmann, Jochen Weile, Alexander Goesmann

Journal:

BMC Systems Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2007

21

Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms

Jan Baumbach, Sven Rahmann, Andreas Tauch

Journal:

BMC Systems Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1004 KB

english, 2009

22

Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma

Alexander Schramm, Johannes Köster, Tobias Marschall, Marcel Martin, Melanie Schwermer, Kathrin Fielitz, Gabriele Büchel, Matthias Barann, Daniela Esser, Philip Rosenstiel, Sven Rahmann, Angelika Egge

Journal:

International Journal of Cancer

Année:

2012

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2012

23

Efficiently mining protein interaction dependencies from large text corpora

Köster, Johannes, Zamir, Eli, Rahmann, Sven

Journal:

Integrative Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2012

24

Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species

JULIA C. ENGELMANN, SVEN RAHMANN, MATTHIAS WOLF, JÖRG SCHULTZ, EPAMEINONDAS FRITZILAS, SUSANNE KNEITZ, THOMAS DANDEKAR, TOBIAS MÜLLER

Journal:

Molecular Ecology Resources

Année:

2009

Langue:

english

Fichier:

PDF, 393 KB

english, 2009

25

Extension and Robustness of Transitivity Clustering for Protein–Protein Interaction Network Analysis

Wittkop, Tobias, Rahmann, Sven, Röttger, Richard, Böcker, Sebastian, Baumbach, Jan

Journal:

Internet Mathematics

Année:

2011

Langue:

english

Fichier:

PDF, 211 KB

english, 2011

26

CoryneRegNet 3.0—An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli

Jan Baumbach, Tobias Wittkop, Katrin Rademacher, Sven Rahmann, Karina Brinkrolf, Andreas Tauch

Journal:

Journal of Biotechnology

Année:

2007

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2007

27

Supratentorial ependymomas of childhood carryC11orf95–RELAfusions leading to pathological activation of the NF-κB signaling pathway

Pietsch, Torsten, Wohlers, Inken, Goschzik, Tobias, Dreschmann, Verena, Denkhaus, Dorota, Dörner, Evelyn, Rahmann, Sven, Klein-Hitpass, Ludger

Journal:

Acta Neuropathologica

Année:

2014

Langue:

english

Fichier:

PDF, 381 KB

english, 2014

28

A modular computational framework for automated peak extraction from ion mobility spectra

D’Addario, Marianna, Kopczynski, Dominik, Baumbach, Jörg, Rahmann, Sven

Journal:

BMC Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 593 KB

english, 2014

29

Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data

Rahmann, Sven, Martin, Marcel, Schulte, Johannes H., Köster, Johannes, Marschall, Tobias, Schramm, Alexander

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 834 KB

english, 2013

30

Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands

Pape, Utz J., Rahmann, Sven, Sun, Fengzhu, Vingron, Martin

Journal:

Journal of Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 532 KB

english, 2008

31

Impact of Highly Active Antiretroviral Therapy on Cognitive Processing in HIV Infection: Cross-Sectional and Longitudinal Studies of Event-Related Potentials

Husstedt, Ingo-W., Frohne, Lars, Böckenholt, Sven, Frese, Achim, Rahmann, Alexandra, Heese, Christoph, Reichelt, Doris, Evers, Stefan

Journal:

AIDS Research and Human Retroviruses

Année:

2002

Langue:

english

Fichier:

PDF, 113 KB

english, 2002

32

BETTER GENECHIP MICROARRAY LAYOUTS BY COMBINING PROBE PLACEMENT AND EMBEDDING

DE CARVALHO, SÉRGIO A., RAHMANN, SVEN

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 599 KB

english, 2008

33

Fast Large Scale Oligonucleotide Selection Using the Longest Common Factor Approach

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2003

Langue:

english

Fichier:

PDF, 487 KB

english, 2003

34

On the Power of Profiles for Transcription Factor Binding Site Detection

Rahmann, Sven, Müller, Tobias, Vingron, Martin

Journal:

Statistical Applications in Genetics and Molecular Biology

Année:

2003

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2003

35

N6-Adenosine Methylation in MiRNAs

Berulava, Tea, Rahmann, Sven, Rademacher, Katrin, Klein-Hitpass, Ludgar, Horsthemke, Bernhard, Antoniewski, Christophe

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2015

36

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Exact ILP solutions for phylogenetic minimum flip problems

Chimani, Markus, Rahmann, Sven, Böcker, Sebastian

Année:

2010

Langue:

english

Fichier:

PDF, 350 KB

english, 2010

37

[ACM Press the 2005 ACM symposium - Santa Fe, New Mexico (2005.03.13-2005.03.17)] Proceedings of the 2005 ACM symposium on Applied computing - SAC '05 - Editorial message

Palakal, Mathew J., Rahmann, Sven, Liao, Birong

Année:

2005

Langue:

english

Fichier:

PDF, 87 KB

english, 2005

38

[ACM Press the 11th Annual conference - Montreal, Québec, Canada (2009.07.08-2009.07.12)] Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09 - Modeling evolutionary fitness for DNA motif discovery

Rahmann, Sven, Marschall, Tobias, Behler, Frank, Kramer, Oliver

Année:

2009

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2009

39

SimLoRD – Simulation of Long Read Data

Stöcker, Bianca, Köster, Johannes, Rahmann, Sven

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 290 KB

english, 2016

40

An online peak extraction algorithm for ion mobility spectrometry data

Kopczynski, Dominik, Rahmann, Sven

Journal:

Algorithms for Molecular Biology

Année:

2015

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2015

41

Recurrent alterations of TNFAIP 3 (A20) in T-cell large granular lymphocytic leukemia

Johansson, Patricia, Bergmann, Anke, Rahmann, Sven, Wohlers, Inken, Scholtysik, René, Przekopowitz, Martina, Seifert, Marc, Tschurtschenthaler, Gertraud, Webersinke, Gerald, Jäger, Ulrich, Siebert, Re

Journal:

International Journal of Cancer

Année:

2016

Langue:

english

Fichier:

PDF, 257 KB

english, 2016

42

Trade-off between taxon diversity and functional diversity in European lake ecosystems

Grossmann, Lars, Beisser, Daniela, Bock, Christina, Chatzinotas, Antonis, Jensen, Manfred, Preisfeld, Angelika, Psenner, Roland, Rahmann, Sven, Wodniok, Sabina, Boenigk, Jens

Journal:

Molecular Ecology

Année:

2016

Langue:

english

Fichier:

PDF, 808 KB

english, 2016

43

Epigenetic dynamics of monocyte-to-macrophage differentiation

Wallner, Stefan, Schröder, Christopher, Leitão, Elsa, Berulava, Tea, Haak, Claudia, Beißer, Daniela, Rahmann, Sven, Richter, Andreas S., Manke, Thomas, Bönisch, Ulrike, Arrigoni, Laura, Fröhler, Sebas

Journal:

Epigenetics & Chromatin

Année:

2016

Langue:

english

Fichier:

PDF, 4.40 MB

english, 2016

44

DDRAGE: A Dataset Generator to Evaluate ddRADseq Analysis Software

Timm, Henning, Weigand, Hannah, Weiss, Martina, Leese, Florian, Rahmann, Sven

Journal:

Molecular Ecology Resources

Année:

2017

Langue:

english

Fichier:

PDF, 710 KB

english, 2017

45

Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0

Wittkop, Tobias, Rahmann, Sven, Baumbach, Jan

Journal:

Journal of Integrative Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 484 KB

english, 2010

46

MoRAine - A web server for fast computational transcription factor binding motif re-annotation

Baumbach, Jan, Wittkop, Tobias, Weile, Jochen, Kohl, Thomas, Rahmann, Sven

Journal:

Journal of Integrative Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 406 KB

english, 2008

47

Cancer evolution, mutations, and clonal selection in relapse neuroblastoma

Schulte, Marc, Köster, Johannes, Rahmann, Sven, Schramm, Alexander

Journal:

Cell and Tissue Research

Année:

2018

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2018

48

Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics

Graupner, Nadine, Jensen, Manfred, Bock, Christina, Marks, Sabina, Rahmann, Sven, Beisser, Daniela, Boenigk, Jens

Journal:

FEMS Microbiology Ecology

Année:

2018

Langue:

english

Fichier:

PDF, 778 KB

english, 2018

49

A hybrid parameter estimation algorithm for beta mixtures and applications to methylation state classification

Schröder, Christopher, Rahmann, Sven

Journal:

Algorithms for Molecular Biology

Année:

2017

Langue:

english

Fichier:

PDF, 2.15 MB

english, 2017

50

A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations

Horsch, Salome, Kopczynski, Dominik, Kuthe, Elias, Baumbach, Jörg Ingo, Rahmann, Sven, Rahnenführer, Jörg, Huang, Chun-Hsi

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.25 MB

english, 2017